I have now used Scrivener for two cycles of editing a magazine. The program gives me everything I need, very solid and stable environment for both writing and editing. Well done, Scrivener.
Over the past two months I have begun using Tinderbox for almost all notetaking. I am getting more familiar with the program and have succeeded in providing a little automation. My next project involves looking at linking and some potential for further analysis. Well done, Tinderbox!